Phage-Host interactions

Heatmaps

Phage Heatmap

Heatmap of all phage genes based on mean TPM values per time point normalized by z-score and clustered by similarity of gene expression over the time course of infection.

Using the variance range slider, you can focus on genes with the highest or lowest variance, or define a specific variance range of interest.

Host Heatmap

Heatmap of all host genes based on mean TPM values per time point normalized by z-score and clustered by similarity of gene expression over the time course of infection.

Using the variance range slider, you can focus on genes with the highest or lowest variance, or define a specific variance range of interest.

Phage Gene Classification

Phage Gene Expression Profiles

Phage gene expression over time course of infection based on mean TPM values per time point normalized to the highest mean TPM value per gene. Phage genes are classified (early, middle, late) either based on the time point of maximal expression (Class Max) or a threshold of 20 % of maximal gene expression (Class Threshold)

Gene selection

Phage Genome

Visualization of the selected Phage Genome.

The colored areas represent the selected genes, while the gray blocks represent the genes that are currently not selected.
Each gene can be clicked to select/deselect it for the view below.

Please note: the data displayed in the genome viewer is sourced directly from GFF files, without cleaning or validation. We do not take responsibility for its accuracy or biological correctness
Show Gene Classification Go to Genome Viewer

Phage Genes

Phage gene expression profiles over the time course of infection based on mean TPM values normalized to the highest mean TPM value per gene.

Selected Phage Gene Heatmap

Heatmap of all selected phage genes based on mean TPM values per time point normalized by z-score and clustered by similarity of gene expression over the time course of infection.

Host Genes

Host gene expression profiles over the time course of infection based on mean TPM values normalized to the highest mean TPM value per gene.

Selected Host Gene Heatmap

Heatmap of all selected host genes based on mean TPM values per time point normalized by z-score and clustered by similarity of gene expression over the time course of infection.